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Publikationen

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2026
Tissue-specific restriction of transposon-derived regulatory elements safeguards cell-type identity.
Milovanović D, Duc J, Matsushima W et al. — Cell reports
2025
The 'mono-side' of cutaneous adverse drug reactions.
Martins F, André R, Planet E et al. — Journal of the European Academy of Dermatology and Venereology : JEADV
2025
Injury-induced intestinal stem cell renewal requires capillary morphogenesis gene 2.
Bracq L, Chuat A, Kunz B et al. — EMBO molecular medicine
2025
Single-cell transcriptome analysis reveals atypical monocytes circulating ahead of acute graft-versus-host disease clinical onset.
Martins F, Planet E, Marino D et al. — Journal of leukocyte biology
2025
Identification of a lipid oxygen radical defense pathway and its epigenetic control.
S Mesquita F, Abrami L, Forey R et al. — Nature communications
2025
Evolutionarily recent transcription factors partake in human cell cycle regulation.
Pulver C, Forey R, Lederer AR et al. — Cell genomics
2025
Cancer cells subvert the primate-specific KRAB zinc finger protein ZNF93 to control APOBEC3B.
Forey R, Raclot C, Pulver C et al. — Proceedings of the National Academy of Sciences of the United States of America
2024
Clusters of lineage-specific genes are anchored by ZNF274 in repressive perinucleolar compartments.
Begnis M, Duc J, Offner S et al. — Science advances
2024
A Cluster of Evolutionarily Recent KRAB Zinc Finger Proteins Protects Cancer Cells from Replicative Stress-Induced Inflammation.
Martins F, Rosspopoff O, Carlevaro-Fita J et al. — Cancer research
2024
Transposable elements mediate genetic effects altering the expression of nearby genes in colorectal cancer.
Lykoskoufis NMR, Planet E, Ongen H et al. — Nature communications
2024
Ancestral genome reconstruction enhances transposable element annotation by identifying degenerate integrants.
Matsushima W, Planet E, Trono D — Cell genomics
2023
Statistical learning quantifies transposable element-mediated cis-regulation.
Pulver C, Grun D, Duc J et al. — Genome biology
2023
The immunopeptidome landscape associated with T cell infiltration, inflammation and immune editing in lung cancer.
Kraemer AI, Chong C, Huber F et al. — Nature cancer
2023
Decreased expression of mitochondrial aminoacyl-tRNA synthetases causes downregulation of OXPHOS subunits in type 2 diabetic muscle.
López-Soldado I, Torres AG, Ventura R et al. — Redox biology
2023
Efficient and sensitive profiling of RNA-protein interactions using TLC-CLIP.
Ernst C, Duc J, Trono D — Nucleic acids research
2023
Seroprevalence of anti-SARS-CoV-2 antibodies and cross-variant neutralization capacity after the Omicron BA.2 wave in Geneva, Switzerland: a population-based study.
Zaballa ME, Perez-Saez J, de Mestral C et al. — The Lancet regional health. Europe
2023
Genetic features and genomic targets of human KRAB-zinc finger proteins.
de Tribolet-Hardy J, Thorball CW, Forey R et al. — Genome research
2022
Transposable elements contribute to the spatiotemporal microRNA landscape in human brain development.
Playfoot CJ, Sheppard S, Planet E, Trono D — RNA (New York, N.Y.)
2022
Primate-specific transposable elements shape transcriptional networks during human development.
Pontis J, Pulver C, Playfoot CJ et al. — Nature communications
2022
KRAB zinc finger protein ZNF676 controls the transcriptional influence of LTR12-related endogenous retrovirus sequences.
Iouranova A, Grun D, Rossy T et al. — Mobile DNA
2022
Transposon-activated POU5F1B promotes colorectal cancer growth and metastasis.
Simó-Riudalbas L, Offner S, Planet E et al. — Nature communications
2021
Transposable elements and their KZFP controllers are drivers of transcriptional innovation in the developing human brain.
Playfoot CJ, Duc J, Sheppard S et al. — Genome research
2020
KAP1 targets actively transcribed genomic loci to exert pleomorphic effects on RNA polymerase II activity.
Kauzlaric A, Jang SM, Morchikh M et al. — Philosophical transactions of the Royal Society of London. Series B, Biological sciences
2020
Integrated proteogenomic deep sequencing and analytics accurately identify non-canonical peptides in tumor immunopeptidomes.
Chong C, Müller M, Pak H et al. — Nature communications
2020
Primate-restricted KRAB zinc finger proteins and target retrotransposons control gene expression in human neurons.
Turelli P, Playfoot C, Grun D et al. — Science advances
2019
The interactome of KRAB zinc finger proteins reveals the evolutionary history of their functional diversification.
Helleboid PY, Heusel M, Duc J et al. — The EMBO journal
2019
Pharmacological Induction of a Progenitor State for the Efficient Expansion of Primary Human Hepatocytes.
Unzu C, Planet E, Brandenberg N et al. — Hepatology (Baltimore, Md.)
2019
Hominoid-Specific Transposable Elements and KZFPs Facilitate Human Embryonic Genome Activation and Control Transcription in Naive Human ESCs.
Pontis J, Planet E, Offner S et al. — Cell stem cell
2019
DPPA2 and DPPA4 are necessary to establish a 2C-like state in mouse embryonic stem cells.
De Iaco A, Coudray A, Duc J, Trono D — EMBO reports
2019
ZNF445 is a primary regulator of genomic imprinting.
Takahashi N, Coluccio A, Thorball CW et al. — Genes & development
2019
ZFP30 promotes adipogenesis through the KAP1-mediated activation of a retrotransposon-derived Pparg2 enhancer.
Chen W, Schwalie PC, Pankevich EV et al. — Nature communications
2018
KAP1 facilitates reinstatement of heterochromatin after DNA replication.
Jang SM, Kauzlaric A, Quivy JP et al. — Nucleic acids research
2018
Mitochondrial DNA and TLR9 drive muscle inflammation upon Opa1 deficiency.
Rodríguez-Nuevo A, Díaz-Ramos A, Noguera E et al. — The EMBO journal
2018
Individual retrotransposon integrants are differentially controlled by KZFP/KAP1-dependent histone methylation, DNA methylation and TET-mediated hydroxymethylation in naïve embryonic stem cells.
Coluccio A, Ecco G, Duc J et al. — Epigenetics & chromatin
2018
Properties of LINE-1 proteins and repeat element expression in the context of amyotrophic lateral sclerosis.
Pereira GC, Sanchez L, Schaughency PM et al. — Mobile DNA
2017
Early-onset and classical forms of type 2 diabetes show impaired expression of genes involved in muscle branched-chain amino acids metabolism.
Hernández-Alvarez MI, Díaz-Ramos A, Berdasco M et al. — Scientific reports
2017
DUX-family transcription factors regulate zygotic genome activation in placental mammals.
De Iaco A, Planet E, Coluccio A et al. — Nature genetics
2017
Polyphenic trait promotes liver cancer in a model of epigenetic instability in mice.
Cassano M, Offner S, Planet E et al. — Hepatology (Baltimore, Md.)
2017
The mouse genome displays highly dynamic populations of KRAB-zinc finger protein genes and related genetic units.
Kauzlaric A, Ecco G, Cassano M et al. — PloS one
2016
Molecular Criteria for Defining the Naive Human Pluripotent State.
Theunissen TW, Friedli M, He Y et al. — Cell stem cell
2016
Transposable Elements and Their KRAB-ZFP Controllers Regulate Gene Expression in Adult Tissues.
Ecco G, Cassano M, Kauzlaric A et al. — Developmental cell
2016
Mfn2 deficiency links age-related sarcopenia and impaired autophagy to activation of an adaptive mitophagy pathway.
Sebastián D, Sorianello E, Segalés J et al. — The EMBO journal
2016
Stratification and therapeutic potential of PML in metastatic breast cancer.
Martín-Martín N, Piva M, Urosevic J et al. — Nature communications
2016
FoxA and LIPG endothelial lipase control the uptake of extracellular lipids for breast cancer growth.
Slebe F, Rojo F, Vinaixa M et al. — Nature communications
2016
MicroRNA Profile in CD8+ T-Lymphocytes from HIV-Infected Individuals: Relationship with Antiviral Immune Response and Disease Progression.
Egaña-Gorroño L, Guardo AC, Bargalló ME et al. — PloS one
2015
A KAP1 phosphorylation switch controls MyoD function during skeletal muscle differentiation.
Singh K, Cassano M, Planet E et al. — Genes & development
2015
Enhanced MAF Oncogene Expression and Breast Cancer Bone Metastasis.
Pavlovic M, Arnal-Estapé A, Rojo F et al. — Journal of the National Cancer Institute
2014
Ibf1 and Ibf2 are novel CP190-interacting proteins required for insulator function.
Cuartero S, Fresán U, Reina O et al. — The EMBO journal
2014
Colon cancer cells colonize the lung from established liver metastases through p38 MAPK signalling and PTHLH.
Urosevic J, Garcia-Albéniz X, Planet E et al. — Nature cell biology
2014
Evolutionally dynamic L1 regulation in embryonic stem cells.
Castro-Diaz N, Ecco G, Coluccio A et al. — Genes & development
2014
RARRES3 suppresses breast cancer lung metastasis by regulating adhesion and differentiation.
Morales M, Arenas EJ, Urosevic J et al. — EMBO molecular medicine
2014
Loss of transcriptional control over endogenous retroelements during reprogramming to pluripotency.
Friedli M, Turelli P, Kapopoulou A et al. — Genome research
2014
Interplay of TRIM28 and DNA methylation in controlling human endogenous retroelements.
Turelli P, Castro-Diaz N, Marzetta F et al. — Genome research
2012
Transcriptional variation in the malaria parasite Plasmodium falciparum.
Rovira-Graells N, Gupta AP, Planet E et al. — Genome research
2012
Identification of NOG as a specific breast cancer bone metastasis-supporting gene.
Tarragona M, Pavlovic M, Arnal-Estapé A et al. — The Journal of biological chemistry
2012
htSeqTools: high-throughput sequencing quality control, processing and visualization in R.
Planet E, Attolini CS, Reina O et al. — Bioinformatics (Oxford, England)
2012
Identification of novel type 2 diabetes candidate genes involved in the crosstalk between the mitochondrial and the insulin signaling systems.
Mercader JM, Puiggros M, Segrè AV et al. — PLoS genetics
2011
Tumor-stroma interactions a trademark for metastasis.
Morales M, Planet E, Arnal-Estape A et al. — Breast (Edinburgh, Scotland)

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